16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary.

ABSTRACT Biodiversity monitoring is an essential component of restoration efforts. We sequenced 16S rRNA gene amplicons from sediments and waters of Hunts Point Riverside Park and Soundview Park, located in a historically degraded but recovering urban estuary in New York. In total, 508,352 unique amplicon sequence variants were recovered, and Proteobacteria was the dominant phylum.