Persistent Sampling of Vertically Migrating Biological Layers by an Autonomous Underwater Vehicle Within the Beam of a Seabed-Mounted Echosounder

Many pelagic animals, such as krill, lanternfish, and cephalopods, migrate to deep water at dawn to avoid visual predators during daylight hours and move up toward the sea surface at dusk to search for food. This behavior is termed “diel vertical migration.” Migrating animals graze on phytoplankton or zooplankton and in turn serve as food for higher trophic levels, hence providing a key mechanism for carbon export via this migration. These animals are often observed as sound-scattering layers by echosounders, but the animals causing the acoustic scattering are difficult to identify using acoustics alone. In a spring 2019 experiment in Monterey Bay, we deployed autonomous underwater and surface vehicles over a seabed-mounted upward-looking echosounder to collect environmental DNA (eDNA) with the goal of identifying the vertically migrating animals. The echosounder was installed at 890-m depth on the Monterey Accelerated Research System (MARS) seabed cabled ocean observatory, providing real-time data of acoustic backscatter from the full water column. One long-range autonomous underwater vehicle (LRAUV) carrying a Third-Generation Environmental Sample Processor (3G-ESP) acquired water samples from a sequence of layers from near surface down to $\sim$ 290 m as directed by the distribution of animals observed by the echosounder. During the sampling of each layer, the LRAUV ran on a tight circular yo-yo trajectory directly above the echosounder, remaining in its beam by acoustically tracking a station-keeping Wave Glider on the sea surface marking the echosounder’s latitude and longitude. The persistent and simultaneous acoustic observation and eDNA acquisition enables identification of animals at precise locations to better understand their vertical migration behaviors. We present the methods and the system performance in the experiment.