A quantitative analysis of heterogeneities and hallmarks in acute myelogenous leukaemia
2019
Acute myelogenous leukaemia(AML) is associated with risk factors that are largely unknown and with a heterogeneous response to treatment. Here, we provide a comprehensive quantitative understanding of AML
proteomicheterogeneities and hallmarks by using the AML
ProteomeAtlas, a
proteomicsdatabase that we have newly derived from MetaGalaxy analyses, for the
proteomicprofiling of 205 patients with AML and 111 leukaemia cell lines. The analysis of the dataset revealed 154 functional patterns based on common
molecular pathways, 11 constellations of correlated functional patterns and 13 signatures that stratify the outcomes of patients. We find limited overlap between
proteomicsdata and both cytogenetics and genetic mutations. Moreover, leukaemia cell lines show limited
proteomicsimilarities with cells from patients with AML, suggesting that a deeper focus on patient-derived samples is needed to gain disease-relevant insights. The AML
ProteomeAtlas provides a knowledge base for
proteomicpatterns in AML, a guide to leukaemia cell line selection, and a broadly applicable computational approach for quantifying the heterogeneities of protein expression and
proteomichallmarks in AML.
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