Proteomic data integration highlights central actors involved in einkorn (Triticum monococcum ssp. monococcum) grain filling in relation to grain storage protein composition

Albumins and globulins (AGs) of wheat endosperm represent about 20% of total grain proteins. Some of these physiologically active proteins can influence the synthesis of storage proteins(SPs) ( gliadinsand glutenins) and consequently, rheological properties of wheat flour and processing. To identify such AGs, data, ( publishedby Bonnot et al. (2017)) concerning abundance in 352 AGs and in the different seed SPs during grain filling and in response to different nitrogen (N) and sulphur (S) supply, were integrated with mixOmics R package. Relationships between AGs and SPs were first unraveled using the unsupervised method sparse Partial Least Square, also known as Projection to Latent Structure (sPLS). Then, data were integrated using a supervised approach taking into account the nutrition and the grain developmental stage. We used the block.splsda procedure also referred to as DIABLO (Data Integration Analysis for Biomarker discoveryusing Latent variable approaches for Omicsstudies). These approaches led to the identification of discriminant and highly correlated features from the two datasets (AGs and SPs) which are not necessarily differentially expressed during seed development or in response to N or S supply. Eighteen AGs were correlated with the quantity of storage proteinsper grain. A statistical validation of these proteins by genetic associationanalysis confirmed that 5 out of this AG setwere robust candidate proteins able to modulate the seed storage proteinsynthesis. In conclusion, this latter result confirmed that the integrative strategy is an adequate way to reduce the number of potentially relevant AGs for further functional validation.