PEOPLE

Faculty

Yun Gu

Associate Professor

Office Phone: +8619921973640
Location: Insitute of Medical Robotics
E-mail: yungu@ieee.org
Homepage: https://yungu-imr.github.io

Biography

Yun Gu received his B.S. in Control Engineering in 2013 from Xian Jiao Tong University, MS in Control Engineering in 2015 from Shanghai Jiao Tong University, and Ph.D. degree in Biomedical Engineering from Shanghai Jiao Tong University in 2019. He was also a visiting scholar in the Hamlyn Centre, Imperial College London from 2016 to 2018. Since 2020, he has been at the Shanghai Jiao Tong University where he is currently Assistant Professor of the Department of Automation, and the Institute of Medical Robotics . For more details, please refer to my Personal CV below.

Research Interests

Medical Image Analysis, Computer-Aided Intervention

Selected Publications


  1. Y. Gu
    , C. Gu, J. Yang, J. Sun and G.-Z. Yang, Vision-Kinematics-Interaction for Robotic-Assisted Bronchoscopy Navigation,
    IEEE Transactions on Medical Imaging (TMI)
    , 41(12): 3600-3610, 2022.
  2. Y. Gu
    , Y. Xu, J. Yang, W. Xue and G.-Z. Yang, Towards Robust Feature Embedding for Endomicroscopy Image Classification,
    IEEE Transactions on Medical Imaging (TMI)
    , 41(11): 3242-3252, 2022.
  3. Y. Gu
    , K. Vyas, J. Yang, and G.-Z. Yang, Transfer Recurrent Feature Learning for Endomicroscopy Image Recognition,
    IEEE Transactions on Medical Imaging (TMI)
    , 38(3): 791-801, 2019.
  4. Y. Gu
    , B. Walter, J. Yang, A. Meining, and G.-Z. Yang, “Triplet Feature Learning on Endoscopic Video Manifold for Online GastroIntestinal Image Retargeting,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2019, pp. 38–46.
  5. Y. Gu
    , K. Vyas, J. Yang, and G.-Z. Yang, “Weakly supervised representation learning for endomicroscopy image analysis,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2018, pp. 326–334.
    Early Accepted, Student Travel Award
  6. Y. Gu
    , K. Vyas, J. Yang, and G.-Z. Yang, “Unsupervised feature learning for endomicroscopy image retrieval,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2017, pp. 64–71.
  7. Xin You, Junjun He, Jie Yang,
    Y. Gu
    , Learning with Explicit Shape Priors for Medical Image Segmentation,
    IEEE Transactions on Medical Imaging (TMI)
    , 2024.
  8. Puyang Wang, Dazhou Guo, Dandan Zheng, Minghui Zhang, Haogang Yu, Xin Sun, Jia Ge,
    Y. Gu
    , Le Lu, Xianghua Ye, Dakai Jin, Accurate Airway Tree Segmentation in CT Scans via Anatomy-aware Multi-class Segmentation and Topology-guided Iterative Learning,
    IEEE Transactions on Medical Imaging (TMI)
    , 2024.
  9. Chao Xia, Jiyue Wang, Yulei Qin, Juan Wen, Zhaojiang Liu, Ning Song, Lingqian Wu, Bing Chen,
    Y. Gu
    , Jie Yang, KaryoNet: An End-to-End Combinatorial Optimization Method for Chromosome Recognition in Metaphase Cell Images,
    IEEE Transactions on Medical Imaging (TMI)
    , 42(10): 2899-2911, 2023.
  10. W. Yu, H. Zheng,
    Y. Gu
    , F. Xie, J. Yang, J. Sun and G.-Z. Yang, TNN: Tree Neural Network for Airway Anatomical Labeling,
    IEEE Transactions on Medical Imaging (TMI)
    , 42(1):103-118, 2023
  11. H Zheng, Y Qin,
    Y. Gu
    , F Xie, J Yang, J Sun, GZ Yang, Alleviating class-wise gradient imbalance for pulmonary airway segmentation,
    IEEE Transactions on Medical Imaging (TMI)
    , 40(9): 2452-2462, 2021.
  12. Y Qin, H Zheng,
    Y. Gu
    , X Huang, J Yang, L Wang, F Yao, YM Zhu, G.Z Yang, Learning tubule-sensitive CNNs for pulmonary airway and artery-vein segmentation in CT,
    IEEE Transactions on Medical Imaging (TMI)
    , 40(6): 1603-1617, 2021
  13. Yang Nan, ..., Minghui Zhang,
    Y. Gu
    , Hanxiao Zhang,..., Hunting imaging biomarkers in pulmonary fibrosis: Benchmarks of the AIIB23 challenge,
    Medical Image Analysis (MedIA)
    , 2024.
  14. H. Zhang, L. Chen, X. Gu, M. Zhang, Y. Qin, F. Yao, Z. Wang,
    Y. Gu
    and G.-Z. Yang, Trustworthy learning with (un)sure annotation for lung nodule diagnosis with CT,
    Medical Image Analysis (MedIA)
    , 83: 102627, 2023
  15. M. Zhang,...,
    Y. Gu
    , Multi-site, Multi-domain Airway Tree Modeling,
    Medical Image Analysis (MedIA)
    , 90:102957, 2023
  16. C. Zhang, H. Zheng,
    Y. Gu
    , Dive into the Details of Self-supervised Learning for Medical Image Analysis,
    Medical Image Analysis (MedIA)
    , 89:102879, 2023
  17. M. Zhang, H. Zhang, X. You, G.-Z. Yang,
    Y. Gu
    , “Implicit Representation Embraces Challenging Attributes of Pulmonary Airway Tree Structures”,
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2024.
  18. X. You,
    Y. Gu
    , Y. Wu, M. Zhang, M. Ding, Y. Yu, J. Yang, “Semantic difference guidance for the uncertain boundary segmentation of CT left atrium appendage”,
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2023.
  19. H. Yue,
    Y. Gu
    “TCL: Triplet Consistent Learning for Odometry Estimation of Monocular Endoscope”,
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2023.
  20. Y. Yang, M. Wei, J. He, J. Yang, J. Ye and
    Y. Gu
    , “Pick the Best Pre-trained Model: Towards Transferability Estimation For Medical Image Segmentation”,
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2023,
    Early Accepted
    .
  21. W. Yu, H. Zheng,
    Y. Gu
    , F. Xie, J. Sun, J. Yang, “AirwayFormer: Structure-Aware Boundary-Adaptive Transformers for Airway Anatomical Labeling”,
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2023,
    Early Accepted
    .
  22. M. Zhang, H. Zhang, G.-Z. Yang,
    Y. Gu
    , “CFDA: Collaborative Feature Disentanglement and Augmentation for Pulmonary Airway Tree Modeling of COVID-19 CTs,”
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2022,
    Early Accepted, Student Travel Award
    .
  23. C. Xia, J. Wang, Y. Qin,
    Y. Gu
    , B. Chen, J. Yang, “An End-to-End Combinatorial Optimization Method for R-band Chromosome Recognition with Grouping Guided Attention,”
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2022,
    Early Accepted
    .
  24. H Zheng, Y Qin,
    Y. Gu
    , F Xie, J Sun, J Yang, GZ Yang, “Refined Local-imbalance-based Weight for Airway Segmentation in CT,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2021, pp. 410–419.
  25. H. Zhang,
    Y. Gu
    , Y. Qin, F. Yao, and G.-Z. Yang, “Learning with sure data for nodule-level lung cancer prediction,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2020, pp. 570–578.
  26. H. Zheng, Z. Zhuang, Y. Qin,
    Y. Gu
    , J. Yang, and G.-Z. Yang, “Weakly supervised deep learning for breast cancer segmentation with coarse annotations,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2020, pp. 450–459.
  27. Y Qin, H Zheng,
    Y. Gu
    , X Huang, J Yang, L Wang, YM Zhu, “Learning bronchiole-sensitive airway segmentation CNNs by feature recalibration and attention distillation,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2020, pp. 221–231.
    Early Accepted
  28. Y Qin, M Chen, H Zheng,
    Y. Gu
    , M Shen, J Yang, X Huang, YM Zhu, GZ Yang, “Airwaynet: a voxel-connectivity aware approach for accurate airway segmentation using convolutional neural networks,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2019, pp. 212–220.
  29. H. Zheng,
    Y. Gu
    , Y. Qin, X. Huang, J. Yang, G.-Z. Yang, “Small lesion classification in dynamic contrast enhancement MRI for breast cancer early detection,” in
    International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
    , 2018, pp. 410–419.

Teaching

2020-2021 Fall CS-171 C++ Programming
2020-2021/2021-2022 Fall MS-232 Zhiyuan Honor Course: Advanced Medical Imaging and Intelligent Navigation
2020-2021 Spring AU-342 Artificial Intelligence
2021-2022 Fall CS-1501 C++ Programming
2021-2022 Spring AU-3323 Artificial Intelligence
2022-2023 Spring AU-3323 Artificial Intelligence
2022-2023 Spring CS-1501 C++ Programming
2023-2024 Spring AU-3323 Artificial Intelligence
2023-2024 Spring CS-1501 C++ Programming

Professional Affiliations

Senior PC Member/Area Chair:
MICCAI 2023.2024; IPCAI 2024,2025;
PC Member/Conference Reviewer:
MICCAI 2018-2022; ICRA 2020-2024; IROS 2021-2024; CVPR 2021-2024; ICCV 2021,2023; ECCV 2022,2024, AAAI 2022-2025, etc.
Journal Reviewer:
MedIA, IEEE TIP/TMI/TBME/JBHI/TRO/TMM/TCSVT/TASE/TCDS/RAL, MLJ, PR, etc.

File

Institute of Medical Robotics

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