cuSPARSE¶
简介¶
cuSPARSE 库为稀疏矩阵提供经 GPU 加速的基本线性代数子程序，与仅使用 CPU 的替代方案相比，这一程序的执行速度有显著的提升。此库提供了用于构建 GPU 加速型求解器的功能。在从事机器学习、计算流体力学、地震勘探及计算科学等应用的工程师和科学家群体中，cuSPARSE 得到了广泛采用。通过使用 cuSPARSE，应用将能自动从定期性能提升及全新 GPU 架构中受益。cuSPARSE 库包含在 NVIDIA HPC SDK 和 CUDA 工具包中。
cuSPARSE使用说明¶
思源一号上的cuSPARSE¶
先创建一个目录cuSPARSEtest并进入该目录：
mkdir cuSPARSEtest
cd cuSPARSEtest
在该目录下创建如下测试文件cuSPARSEtest.cu：
// 求解下三角稀疏线性方程组Ax=b
#include <cuda_runtime_api.h> // cudaMalloc, cudaMemcpy, etc.
#include <cusparse.h> // cusparseSpSV
#include <stdio.h> // printf
#include <stdlib.h> // EXIT_FAILURE
#define CHECK_CUDA(func) \
{ \
cudaError_t status = (func); \
if (status != cudaSuccess) \
{ \
printf("CUDA API failed at line %d with error: %s (%d)\n", \
__LINE__, cudaGetErrorString(status), status); \
return EXIT_FAILURE; \
} \
}
#define CHECK_CUSPARSE(func) \
{ \
cusparseStatus_t status = (func); \
if (status != CUSPARSE_STATUS_SUCCESS) \
{ \
printf("CUSPARSE API failed at line %d with error: %s (%d)\n", \
__LINE__, cusparseGetErrorString(status), status); \
return EXIT_FAILURE; \
} \
}
int main(void)
{
// A = [1, 0, 0, 0
// 0, 4, 0, 0
// 5, 0, 6, 0
// 0, 8, 0, 9]
// b = [1
// 8
// 23
// 52]
// Host problem definition
const int A_num_rows = 4;
const int A_num_cols = 4;
const int A_nnz = 6;
int hA_csrOffsets[] = {0, 1, 2, 4, 6};
int hA_columns[] = {0, 1, 0, 2, 1, 3};
float hA_values[] = {1.0f, 4.0f, 5.0f, 6.0f, 8.0f, 9.0f};
float hX[] = {1.0f, 8.0f, 23.0f, 52.0f};
float hY[] = {0.0f, 0.0f, 0.0f, 0.0f};
float hY_result[] = {1.0f, 2.0f, 3.0f, 4.0f};
float alpha = 1.0f;
//--------------------------------------------------------------------------
// Device memory management
int *dA_csrOffsets, *dA_columns;
float *dA_values, *dX, *dY;
CHECK_CUDA(cudaMalloc((void **)&dA_csrOffsets, (A_num_rows + 1) * sizeof(int)))
CHECK_CUDA(cudaMalloc((void **)&dA_columns, A_nnz * sizeof(int)))
CHECK_CUDA(cudaMalloc((void **)&dA_values, A_nnz * sizeof(float)))
CHECK_CUDA(cudaMalloc((void **)&dX, A_num_cols * sizeof(float)))
CHECK_CUDA(cudaMalloc((void **)&dY, A_num_rows * sizeof(float)))
CHECK_CUDA(cudaMemcpy(dA_csrOffsets, hA_csrOffsets, (A_num_rows + 1) * sizeof(int), cudaMemcpyHostToDevice))
CHECK_CUDA(cudaMemcpy(dA_columns, hA_columns, A_nnz * sizeof(int), cudaMemcpyHostToDevice))
CHECK_CUDA(cudaMemcpy(dA_values, hA_values, A_nnz * sizeof(float), cudaMemcpyHostToDevice))
CHECK_CUDA(cudaMemcpy(dX, hX, A_num_cols * sizeof(float), cudaMemcpyHostToDevice))
CHECK_CUDA(cudaMemcpy(dY, hY, A_num_rows * sizeof(float), cudaMemcpyHostToDevice))
//--------------------------------------------------------------------------
// CUSPARSE APIs
cusparseHandle_t handle = NULL;
cusparseSpMatDescr_t matA;
cusparseDnVecDescr_t vecX, vecY;
void *dBuffer = NULL;
size_t bufferSize = 0;
cusparseSpSVDescr_t spsvDescr;
CHECK_CUSPARSE(cusparseCreate(&handle))
// Create sparse matrix A in CSR format
CHECK_CUSPARSE(cusparseCreateCsr(&matA, A_num_rows, A_num_cols, A_nnz,
dA_csrOffsets, dA_columns, dA_values,
CUSPARSE_INDEX_32I, CUSPARSE_INDEX_32I,
CUSPARSE_INDEX_BASE_ZERO, CUDA_R_32F))
// Create dense vector X
CHECK_CUSPARSE(cusparseCreateDnVec(&vecX, A_num_cols, dX, CUDA_R_32F))
// Create dense vector y
CHECK_CUSPARSE(cusparseCreateDnVec(&vecY, A_num_rows, dY, CUDA_R_32F))
// Create opaque data structure, that holds analysis data between calls.
CHECK_CUSPARSE(cusparseSpSV_createDescr(&spsvDescr))
// Specify Lower|Upper fill mode.
cusparseFillMode_t fillmode = CUSPARSE_FILL_MODE_LOWER;
CHECK_CUSPARSE(cusparseSpMatSetAttribute(matA, CUSPARSE_SPMAT_FILL_MODE, &fillmode, sizeof(fillmode)))
// Specify Unit|Non-Unit diagonal type.
cusparseDiagType_t diagtype = CUSPARSE_DIAG_TYPE_NON_UNIT;
CHECK_CUSPARSE(cusparseSpMatSetAttribute(matA, CUSPARSE_SPMAT_DIAG_TYPE, &diagtype, sizeof(diagtype)))
// allocate an external buffer for analysis
CHECK_CUSPARSE(cusparseSpSV_bufferSize(handle, CUSPARSE_OPERATION_NON_TRANSPOSE,
&alpha, matA, vecX, vecY, CUDA_R_32F,
CUSPARSE_SPSV_ALG_DEFAULT, spsvDescr,
&bufferSize))
CHECK_CUDA(cudaMalloc(&dBuffer, bufferSize))
CHECK_CUSPARSE(cusparseSpSV_analysis(handle, CUSPARSE_OPERATION_NON_TRANSPOSE,
&alpha, matA, vecX, vecY, CUDA_R_32F,
CUSPARSE_SPSV_ALG_DEFAULT, spsvDescr, dBuffer))
// execute SpSV
CHECK_CUSPARSE(cusparseSpSV_solve(handle, CUSPARSE_OPERATION_NON_TRANSPOSE,
&alpha, matA, vecX, vecY, CUDA_R_32F,
CUSPARSE_SPSV_ALG_DEFAULT, spsvDescr))
// destroy matrix/vector descriptors
CHECK_CUSPARSE(cusparseDestroySpMat(matA))
CHECK_CUSPARSE(cusparseDestroyDnVec(vecX))
CHECK_CUSPARSE(cusparseDestroyDnVec(vecY))
CHECK_CUSPARSE(cusparseSpSV_destroyDescr(spsvDescr));
CHECK_CUSPARSE(cusparseDestroy(handle))
//--------------------------------------------------------------------------
// device result check
CHECK_CUDA(cudaMemcpy(hY, dY, A_num_rows * sizeof(float), cudaMemcpyDeviceToHost))
int correct = 1;
for (int i = 0; i < A_num_rows; i++)
{
if (hY[i] != hY_result[i])
{ // direct floating point comparison is not
correct = 0; // reliable
break;
}
}
if (correct)
printf("spsv_csr_example test PASSED\n");
else
printf("spsv_csr_example test FAILED: wrong result\n");
for (size_t i = 0; i < A_num_rows; i++)
{
printf("x[%d] = %f\n", i, hY[i]);
}
//--------------------------------------------------------------------------
// device memory deallocation
CHECK_CUDA(cudaFree(dBuffer))
CHECK_CUDA(cudaFree(dA_csrOffsets))
CHECK_CUDA(cudaFree(dA_columns))
CHECK_CUDA(cudaFree(dA_values))
CHECK_CUDA(cudaFree(dX))
CHECK_CUDA(cudaFree(dY))
return EXIT_SUCCESS;
}
在该目录下创建如下作业提交脚本cuSPARSEtest.slurm:
#!/bin/bash
#SBATCH --job-name=cuSPARSEtest # 作业名
#SBATCH --partition=a100 # a100 队列
#SBATCH -N 1
#SBATCH --ntasks-per-node=1
#SBATCH --cpus-per-task=1 # 1:1 的 GPU:CPU 配比
#SBATCH --gres=gpu:1 # 1 块 GPU
#SBATCH --output=%j.out
#SBATCH --error=%j.err
module load cuda/11.5.0
module load gcc/11.2.0
nvcc cuSPARSEtest.cu -o cuSPARSEtest -lcusparse
./cuSPARSEtest
使用如下命令提交作业：
sbatch cuSPARSEtest.slurm
作业完成后在.out文件中可看到如下结果：
spsv_csr_example test PASSED
x[0] = 1.000000
x[1] = 2.000000
x[2] = 3.000000
x[3] = 4.000000
pi2.0上的cuSPARSE¶
此步骤和上文完全相同；
此步骤和上文完全相同；
在该目录下创建如下作业提交脚本cuSPARSEtest.slurm:
#!/bin/bash
#SBATCH --job-name=cuSPARSEtest # 作业名
#SBATCH --partition=dgx2 # dgx2 队列
#SBATCH -N 1
#SBATCH --ntasks-per-node=1
#SBATCH --cpus-per-task=1 # 1:1 的 GPU:CPU 配比
#SBATCH --gres=gpu:1 # 1 块 GPU
#SBATCH --output=%j.out
#SBATCH --error=%j.err
module load cuda/11.6.2-gcc-8.3.0
module load gcc/8.3.0
nvcc cuSPARSEtest.cu -o cuSPARSEtest -lcusparse
./cuSPARSEtest
使用如下命令提交作业：
sbatch cuSPARSEtest.slurm
作业完成后在.out文件中可看到如下结果：
spsv_csr_example test PASSED
x[0] = 1.000000
x[1] = 2.000000
x[2] = 3.000000
x[3] = 4.000000
参考资料¶
最后更新:
2024 年 10 月 14 日